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CALL FOR PAPERS AUGUST 2024

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Submission last date: 15th August 2024

The effect of pollution on fish

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Author: 
Ameera O. Hussain Al-Janabi
Page No: 
7139-7143

In this work, A particular PCR fragment was chosen, and it only covered a portion of the coding regions of the gene producing cytochrome c oxidase subunit I.. Sanger sequencing assays were used on fish samples collected in amplified sections in order to evaluate the pattern of genetic variation. The identification of the observed variations and their phylogenetic distribution was then evaluated using a specific comprehensive tree that was created. By using sequencing reactions, the examined Eurasian carp samples were identified with accuracy. It was confirmed that S21 to S30 belonged to Eurasian carp (Cyprinus carpio). As just one nucleic acid substitution was found in some of the studied Eurasian carp samples, additional information was also seen from the investigated sequencing processes. One nucleic acid substitutions (107T>C) were detected in the Eurosian carp samples with one silent (p.59T=) effect. Five phylogenetic clades with various phylogenetic distances were included in the phylogenetic tree that was created. The tree suggested that the Eurasian carp group and the clade of Prussian carp were compatible neighbors. In compared to the other analyzed wild-type sequences indicated a little impact of the observed differences on the evolutionary placement of fish samples. This resulted from the variation S21 sample being positioned somewhat apart from the other Eurasian carp group wild-type samples. This study discovered that every genetic locus that was used, COX1, was capable of accurately identifying 10 Eurasian carp isolates and differentiating them from the other outgroup samples. Additionally, among the other methods used, this study proposes the potential use of cytochrome c oxidase subunit I amplicons, which have the highest specific capacity to distinguish between phylogenetic diversity. These PCR fragments may effectively be utilized to identify the biological diversity of a larger variety of fish genomes, and can thus be investigated to learn more specifics about these discovered groupings.

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